Taverna 3 architecture and code base

Stian Soiland-Reyes

myGrid team

University of Manchester

http://orcid.org/0000-0001-9842-9718

Taverna Open Development workshop, Manchester, 2014-10-31

Architecture

Taverna Platform

taverna-scufl2 Workflow language and API

taverna-databundle Data Bundles (workflow runs)


taverna3-osgi-services OSGi services for XML handling

taverna3-commons Plugins/services/configuration

taverna3-platform API wrapping execution engine

taverna-starter API for using platform outside OSGi


taverna-maven-archetypes Creating Taverna plugins

taverna3-maven-plugin Packaging Taverna 3 plugins

Taverna Platform in Incubator

 

Suggested:

taverna-language (scufl2, databundle)

taverna-engine-api / -impl (platform-api, engine-core, core activities)

taverna-engine-common-activities (wsdl, rest)

taverna-engine-product (use platform outside OSGi)

taverna-plugin-* (e.g. biomart)

Taverna Engine

Taverna activities

taverna-component-activity Wrap workflow as reusable/updatable/shareable component

taverna-interaction-activity User interactions (web-based)

taverna-rest-activity RESTful web services

taverna-wsdl-activity WSDL SOAP 1/2 Web Services

taverna-xpath-activity Select parts of XML

taverna-jsonpath-activity Select parts of JSON

taverna-spreadsheet-import-activity Load spreadsheet data

taverna-rshell-activity Execute R script

taverna-external-tool-activity Execute command line tools (ssh+local)

 

 

Taverna bioinformatics activities

Discontinued activities

Taverna Workbench

taverna-ui-api Workbench User Interface API (menus, file opening, clipboard, perspectives)

taverna-ui-impl Workbench User Interface implementations, main window

taverna-ui-components

Workbench components (diagram, explorer, results)

taverna-ui-exts

Workbench extensions (looping, renderers, shortcuts)

 

2014-10-31 Taverna 3 Architecture

By Stian Soiland-Reyes

2014-10-31 Taverna 3 Architecture

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