Bootstrapping FAIRly Big

Set up FAIRly Big Workflow in Linux

https://jugit.fz-juelich.de/f.hoffstaedter/lsn_cat12/

  1. Install & setup DataLad (0.16.3)
  2. get OSF account & datalad-OSF extension

EXECUTE the following to create and publish the Workflow dataset:

# clone Repo wit Workflow bootstrap scripts and build workflow
git clone git@jugit.fz-juelich.de:f.hoffstaedter/lsn_cat12.git
./lsn_cat12/LSN_Tutorial_bootstrap_CAT-MCR_AOMIC-PIOP2.sh

# start processing of 3 subjects in parallel
cd AOMIC-PIOP2_LSN_cat12.8/; ./code/process.sub sub-0001 &
./code/process.sub sub-0012 &; ./code/process.sub sub-0123;

# consolidate results and publish dataset to OSF
./code/results.merger
datalad get *
datalad create-sibling-osf --title LSN_Tutorial_CAT-MCR_AOMIC-PIOP2 -s osf
datalad push --to osf

Bootstrapping FAIRly Big

Set up FAIRly Big Workflow on Mac

https://jugit.fz-juelich.de/f.hoffstaedter/lsn_cat12/

  1. Install & setup DataLad (0.16.3)
  2. Install MCR_R2017b in ../[workflowDIR]/MCR/v93
  3. get OSF account & datalad-OSF extension

EXECUTE the following to create and publish the Workflow dataset:

# clone Repo wit Workflow bootstrap scripts and build workflow
git clone git@jugit.fz-juelich.de:f.hoffstaedter/lsn_cat12.git
./lsn_cat12/LSN_Tutorial_bootstrap_CAT-MCR_AOMIC-PIOP2_mac.sh

# start processing of 3 subjects in parallel
cd AOMIC-PIOP2_LSN_cat12.8/; ./code/process.sub sub-0001 &
./code/process.sub sub-0012 &; ./code/process.sub sub-0123;

# consolidate results and publish dataset to OSF
./code/results.merger; datalad get *
datalad create-sibling-osf --title LSN_Tutorial_CAT-MCR_AOMIC-PIOP2 -s osf
datalad push --to osf