Use Cases
June 15, 2016
Public Health England
London, England
Jason M. Coposky
@jason_coposky
Interim Executive Director
The Wellcome Trust Sanger Institute
Sanger - replication
Sanger - Metadata
attribute: library
attribute: total_reads
attribute: type
attribute: lane
attribute: is_paired_read
attribute: study_accession_number
attribute: library_id
attribute: sample_accession_number
attribute: sample_public_name
attribute: manual_qc
attribute: tag
attribute: sample_common_name
attribute: md5
attribute: tag_index
attribute: study_title
attribute: study_id
attribute: reference
attribute: sample
attribute: target
attribute: sample_id
attribute: id_run
attribute: study
attribute: alignment
Sanger - Federation
Sanger - baton
Baton Client
Thin layer over parts of the iRODS C API
● JSON support
● Connection friendly
● Comprehensive logging
● autoconf build on Linux and OSX
Current state
● Metadata listing
● Metadata queries
● Metadata addition
National Institute of Health Sciences
NASA Atmospheric Science Data Center
University College London