The Future of
Scientific Writing and Publishing
Weaving code and science with Quarto
— Trang Lê, PhD
Data scientist, Bristol Myers Squibb
openalexR, pmlb, treeheatr @trangdata
trang.page
Thank You!
Every even integer greater than 2 can be written as the sum of two primes.
1869
1880
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1991: arXiv is launched.
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2003: The Public Library of Science (PLOS) is founded.
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2011: Sci-Hub is born.
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2012: Innovative journals, F1000 Research, PeerJ, and eLife, are launched
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October 2022: eLife is eliminating accept/reject decisions after peer review, instead focusing on public reviews and assessments of preprints.
-
-
2022: OpenAlex is born.
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beyond the traditional peer-review: blogs, books, presentations, etc.
programming language
+
documentation language
literate programming
data + analysis code
interpretation
Jupyter
.ipynb
Rmarkdown
.Rmd
Quarto
.qmd
---
title: "My first qmd"
format: html
---
## Quarto
To learn more about Quarto see <https://quarto.org>.
## Running Code
Quarto can render R, Julia, Python, or Observable.
You can embed code like this:
```{julia}
4 ∉ [2, 5, 1]
```
```{python}
4 not in [2, 5, 1]
```
@thomas_mock
many tutorials/resources available