NAMD

competition

Install

Version

mvapich2 with icc CUDA flag -Ofast           mvapich2 with icc CUDA

mvapich2 with gcc CUDA                                openmpi icc no CUDA

infinband                                                             precompile-TCP

precompile-mulicore-CUDA                         precompile-ibverbs-smp-CUDA

 

Problem

ldd

ldd

Solution

Use absolute path to run instead of bashrc

Others

  • notes

  • ./build --help

  • ./config --help

Strategy

Run all test first

Record remaining time

  • Testcase 1 : 18 min

  • Testcase2 : 42 min

  • Testcase 3 : 82 min

  • Testcase 4 : 21 min

  • Testcase 5 : 24 min

  • Testcase 6 : more than 90 min

  • Competition time 180 min

Miss

  • Time left 94 min

  • Remaining time 1.39 hour

  • 1 hour and 39 min = 99 min

./ V.S ~/

poseidon01 is idle during competition

Time distribution

Dicover

Wall clock

Testcase1 : 

-march=native             1095
-Ofast                             1094
no extra flags                1096
tee                                     1098

Tee

SMP-CUDA

Result

Testcase Walltime
1 1096.31
2 2540.42
3 Na
4 1238.44
5 1424.04
6 Na
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