Mtb transmission cluster inference with Nanopore sequencing

Rolling results for our work checking concordance between Nanopore and Illumina for public health applications

TAC2

Slide deck for my second-year presentation to my thesis advisory committee.

Singularity and workflow management systems

Singularity + (snakemake||nextflow)

Remote container systems

How do I access containers written by other people and/or share my own?

Making containers

How do I create my own Singularity containers?

Using Bash more efficiently