1-2 Papers per Session

Open and Flexible Format

Roughly 15 Minutes p.P.

Lead by Students

1. Explain the Story

2. Discuss the Paper

cs666.org/journalclub

Michal Depa, MS

Stata Diagnostics

Tuesday 3/19 11am 

Quiz 4!

https://cs666.org/assignments/02/

Assignment 3

+

coming soon!

BG

FG

Segmentation

Registration

2D Image Modalities

Ultrasound

X-Ray

What about CT, MRI, EM?

Image Volumes

2D

3D

Slice-based Volume Rendering

Volume Rendering with Ray Casting

https://codesandbox.io/s/github/FNNDSC/ami/tree/master/lessons/06

Volume Rendering with Ray Casting

Single-click Interaction

https://mpsych.github.io/DACTAS/test.html

CACTAS-Tool

https://ohif.org/

https://boostlet.org

https://www.dicomstandard.org/

DICOM

Picture archiving and communication system (PACS)

From DICOM...

https://slicedrop.com

Slicer.org

Processing Frameworks

https://www.mevislab.de/

https://pipeline.loni.usc.edu/

https://invicro.com/capabilities/software/

https://bioimagesuiteweb.github.io/webapp/

http://www.medvis.com/

https://www.nora-imaging.com/

https://www.fil.ion.ucl.ac.uk/spm/software/spm12/

Matlab

https://fsl.fmrib.ox.ac.uk/fsl/fslwiki

https://nipype.readthedocs.io/en/latest/

https://github.com/FNNDSC/wheels

https://github.com/nipype/pydra

https://monai.io/

Target User

https://www.redhat.com/en/creating-chris

Kai Kang, MS, MD, PhD

Etiometry, Inc.

Thursday 3/28

https://www.instagram.com/p/C3k-Jl8pr3w/?img_index=1

Omkar Dash

How to read and write a paper!

https://docs.google.com/presentation/d/1EttX6A1fKzNT2ySevARpqSUrHVF1LAyeqAsLhHZWj-c/edit?usp=sharing