Daniel Haehn PRO
Hi, I am a biomedical imaging and visualization researcher who investigates how computational methods can accelerate biological and medical research.
IAB 2023
Visual Computing for Biomedical Applications
MACHINE
PSYCHOLOGY
DANIELHAEHN.COM
Biomedical Imaging
Loraine Franke
Kristin (Yanan) Qi
Mahsa Geshvadi
Jenna Kim
Ryan Zurrin
Kunal Jain
Josh Kotler
Kiran Sandilya Balivada
MACHINE
PSYCHOLOGY
4x PhD Students
2x MS, 2x UGrad Students
We
Computers
GONZO
MONSTER
VAMPIRE
ZOMBIE
GARGOYLE
2x NVIDIA DGX A100
Thank you!
The Oregon-Massachusetts Mammography Database
OMAMA-DB
Daniel Haehn
Nurit Haspel
Marc Pomplun
Dan Simovici
Bill Lotter
Greg Sorensen
Ryan Zurrin
Pablo Bendiksen
Neha Goyal
Kendrick Khaev
Muskaan Manocha
Jeff Dusenberry
World's Largest Mammography Dataset
publicly available!
with labels!
World's Largest Mammography Dataset
we started with ~1 million images!
2000 x 2000 pixels
100 x 2000 x 2000 voxels
~8 MB
~500 MB
~8 TB
Intelligent Annotation Framework
Two Artificial Neural Networks..
..work together for Quality control
Discriminator finds error pattern of Classifier
Augmented Intelligence
Human + AI
Browser
Editor
Jupyter Notebook
SSHFS mounted Home Folder
TMUX on head node
SSH Tunnels (hop via head node to compute node)
Real-time Visualization for TMS
Transcranial Magnetic Stimulation
Non-invasive Mental Health Treatment
National Institutes of Health
Lipeng Ning
Steve Pieper
Loraine Franke
Jax Luo
Steve Pieper
Yogesh Rathi
Daniel Haehn
Tae Young Park
Real-time Visualization for TMS
open medical imaging platform
Real-time Visualization for TMS
Real-time Visualization for TMS
with tractography
Real-time Visualization for TMS
HTTPS, WSS, Gyro + 3D Slicer
JavaScript Face Tracking
Real-time Visualization for TMS
CACTAS: Carotid Artery Calcification Computed Tomographic Angiography Scoring
endarterectomy vs. stent
Daniel Haehn
Jae Song
Jenna Kim
CACTAS: Carotid Artery Calcification Computed Tomographic Angiography Scoring
Automatic Plaque Annotations
Single-click Interaction
We need massive manual annotations!
CACTAS-Tool
not surprising: much faster!
similar accuracy!
open medical imaging platform
CACTAS-Tool
vs
CACTAS: Carotid Artery Calcification Computed Tomographic Angiography Scoring
endarterectomy vs. stent
Fly Retina Project
Jens Rister
Barry Stein
Daniel Haehn
Kunal Jain
Looking at the color-sensing photoreceptors
using an Electron Microscope
Kiran Balivada
Jeff Dusenberry
Visualization with Neuroglancer
6144 x 4096 x 862 voxels
10 x 10 x 40 nm^3
260+ GB
work in progress!
automatic segmentation
Culture Change in Computer Science and Engineering at the University of Massachusetts Public University System: A Partnership Between UMass Boston and Amherst
Buju Dasgupta
Shannon C. Roberts
Neena Thota
MACHINE
PSYCHOLOGY
DANIELHAEHN.COM
Thank you!
By Daniel Haehn
Hi, I am a biomedical imaging and visualization researcher who investigates how computational methods can accelerate biological and medical research.