Ishanu Chattopadhyay PRO
ML Data Science Biomedicine Social Science Faculty
ishanu chattopadhyay
Asst Professsor
ishanu@uchicago.edu
Zero-burden Screening for IPF
via
The Paraknowledge API
Dmytro Onishchenko
UChicago
[
{
"patient_id": "P000038",
"sex": "F",
"birth_date": "01-01-2006",
"DX_record": [
{"date": "07-31-2006", "code": "Z38.00"},
{"date": "08-07-2006", "code": "P59.9"},
{"date": "08-29-2016", "code": "J01.90"},
{"date": "09-10-2016", "code": "J01.90"},
{"date": "11-14-2016", "code": "J01.91"}
],
"RX_record": [
{"date": "10-29-2011", "code": "rxLDA017"},
{"date": "05-16-2015", "code": "rxIDG004"},
{"date": "08-08-2015", "code": "rxIDG004"},
{"date": "06-04-2016", "code": "rxIDD013"}
],
"PROC_record": [
{"date": "02-05-2007", "code": "90723"},
{"date": "11-05-2007", "code": "J1100"}
]
}
]
{
"predictions": [
{
"error_code": "",
"patient_id": "P000012",
"predicted_risk": 0.005794344620009157,
"probability": 0.8253881317184486
}
],
"target": "TARGET"
}
Data In
Data Out
The Paraknowledge API
curl -X POST -H "Content-Type: application/json" -d '[{"patient_id": "P28109965201", "sex": "M", "age": 89, "fips": "35644", "DX_record": [{"date": "12-16-2011", "code": "R09.02"}, {"date": "12-30-2011", "code": "H04.129"}, {"date": "12-30-2011", "code": "H02.109"}], "RX_record": [], "PROC_record": [{"date": "09-28-2012", "code": "71100"}]}]' "https://us-central1-pkcsaas-01.cloudfunctions.net/zcor_predict?target=IPF&api_key=7eea9f70d79c408f2b69847d911303c"
Current Targets
IPF
ILD
ADRD
CKD
CKD_SEVERE
MELANOMA
CANCER_PANCREAS
CANCER_UTERUS
SISA
Cohort Selection and Risk Analysis Testbed
Baseline prevalence of IPF in ILD patients
~25%
ZCoR PPV: 60% @ 50% sensitivity
1310 positive patients from 2183 flags
screen failure:
~70% \(\rightarrow\) 40%
Selection comparison against baseline of 2+ ILD risk factors
baseline prevalence: ~2%
projected screen failure:
~98% baseline \(\rightarrow\) 45%
The Paraknowledge API
curl -X POST -H "Content-Type: application/json" -d '[{"patient_id": "P28109965201", "sex": "M", "age": 89, "fips": "35644", "DX_record": [{"date": "12-16-2011", "code": "R09.02"}, {"date": "12-30-2011", "code": "H04.129"}, {"date": "12-30-2011", "code": "H02.109"}], "RX_record": [], "PROC_record": [{"date": "09-28-2012", "code": "71100"}]}]' "https://us-central1-pkcsaas-01.cloudfunctions.net/zcor_predict?target=IPF&api_key=7eea9f70d79c408f2b69847d911303c"
Current Targets
IPF
ILD
ADRD
CKD
CKD_SEVERE
MELANOMA
CANCER_PANCREAS
CANCER_UTERUS
SISA
Security Compliance
By Ishanu Chattopadhyay
AI in Bio-med-social problems
ML Data Science Biomedicine Social Science Faculty