PhenoApp
- Phenology on eLTER sites. What do we have?
- Phenology. Short intro to phenology
- PhenoApp. Presentation of the current state






Phenology on eLTER Sites

A quick search for phenology shows this only one result:


Phenology
Phenology on eLTER Sites

eLTER sites & Phenocams



20 sites contains phenocams:
Sites with phenocams |
Asa Field-research Infrastructure (LTER) - Sweden |
DoÃḟana Long-Term Socio-ecological Research Platform - Spain |
IT25 - Val Mazia/Matschertal - Italy |
LTSER Northern Negev - Israel |
LTSER Platform Tyrolean Alps (TA) - Austria |
LTSER Zone Atelier Bassin du RhÃṀne - France |
LTSER Zone Atelier du Bassin de la Moselle - France |
LTSER Zone Atelier Pyrénées-Garonne - France |
LTsER-Montado - Portugal |
OZCAR-RI Regional Spatial Observatory in the South West France - France |
Podgorski Kras - Slovenia |
Rosalia Lehrforst - Austria |
Saldur River Catchment - Italy |
Siljansfors Experimental Forest - Sweden |
Stubai (combination of Neustift meadows and Kaserstattalm) - Austria |
Svartberget Field-research Infrastructure (LTER) - Sweden |
TERENO Eifel Lower Rhine Valley - Germany |
TERENO Harz/Central German Lowland LTER - Germany |
Torgnon Larch forest Tronchaney (IT19 Aosta Valley) - Italy |
Wytham - United Kingdom |


20 sites contains phenocams:


- All LTSER sites
- Add new sites is fast for GEE datasets (MODIS), but Sentinel 2 data have to be calculated for them
rdiaz@ebd.csic.es
diegogarcia@ebd.csic.es
The aim of PhenoApp is both:
-
To Provide SOVs data from EO products
-
To collect and validate EO products with your in situ data.
The Form accepts data through file upload (according to a provided template) or single year data values for SOS, MOS, EOS.



Phenology



Phenology is the study of periodic events in biological life cycles and how these are influenced by seasonal and interannual variations in climate, as well as habitat factors (Merriam-Webster. 2020.).
SOS
MOS
EOS


Tiempo
Phenology. Datasets
PhenoPy
PhenoPy is a python library developed by Javier Lopatin to generate phenometrics from a vegetation index time series of satelllite data.
It Generates svereal bands with the DOY and the vegetation index values of the record.
Start Date | 2017 |
Spatial Resolution | 10 m |
Vegetation Index | NDVI (*EVI2) |
Growth cycles | 1 |
Source | PhenoPy |

- Not GEE tool
- Process locally
- Process slow
- 1 cycle per season
- Can be applied to any satellite collection
- Easy to integrate in the python process
- Lots of bands with phenological info (DOY and Value)
High Resolution Vegetation Phenology and Productivity Parameters. Copernicus Land Monitoring Service (CLMS)
The Vegetation Phenology and Productivity Parameters (VPPs) are yearly metrics that are derived from the Seasonal Trajectories. The VPPs are produced up to 2 seasons.

Start Date | 2017 |
Spatial Resolution | 10 m |
Vegetation Index | PPI |
Growth cycles | 2 |
Source | Copernicus/Wekeo |

- Not GEE collection
- Available since 2017 (wekeo)
- 10 m Spatial Resolution
- Python script to get the data for eLTER sites
Phenology. Datasets
https://www.wekeo.eu/wekeo.eu
MODIS MCD12Q2.006. Land Cover Dynamics Yearly Global 500m
The MCD12Q2 V6 Land Cover Dynamics product (informally called the MODIS Global Vegetation Phenology product) provides estimates of the timing of vegetation phenology at global scales. Additionally, it provides information related to the range and summation of the enhanced vegetation index (EVI) computed from MODIS surface reflectance data at each pixel.
Start Date | 2001 |
Spatial Resolution | 500 m |
Vegetation Index | EVI |
Growth cycles | 2 |
Source | USGS/GEE |


- Lots of NoData!
- 500 m spatial resolution

- Available since 2001
- GEE collection
Phenology. Datasets
PhenoApp
- Google Earth Engine
- Geemap
- Ndvi2Gif


Google Earth Engine

- Cloud computing to visualize and process geographic information
- Petabytes of data (lots of satellite/sensors)
- Raster data (Land cover, climatic data, etc...)
- Vectorial data
- Use your own datasets (space limitation)
- Hundreds of algorithms available
- Huge community very active
- Design local run global



Geemap
Python package based in Google Earth Engine python API and Map application Leaflet


https://www.youtube.com/c/Qiushengwu

Ndvi2Gif
Python packaged built upon Geemap to work with seasonal vegetation indexes by getting pixel statistics for periods of time






Let's see the tool



To Do List

- Convert local rasters collections to Cloud Optimized Geotiff and uploaded them to Google Cloud Storage
- Add more tools/buttons to our custom Geemap application (Land Surface Temperature, Flood Detection)
- Receive and validate your data
- Download csv data from the Map (picking coords values directly from the form), not only rasters
- Point Sampling Tool
- DataLab!!
Thanks for your attention

I hope to meet you all soon in Mallorca...
...but you never know





PhenoApp
By Diego García Díaz
PhenoApp
PhenoApp presentation to eLTER WP4
- 667