HPC

taurus

mammoth

Interactive Tips

[aorth@hpc: ~]$ interactive -c 5
salloc: Granted job allocation 1081

[aorth@hpc: ~]$ interactive -p highmem -J blast
jobname: blast
salloc: Granted job allocation 1082

More SLURM Commands

 scontrol show job <id>

 scancel <id>

[aorth@hpc: ~]$ sinfo -le
Tue Jul  2 15:11:27 2013
NODELIST NODES PARTITION     STATE CPUS    S:C:T MEMORY TMP_DISK WEIGHT FEATURES REASON
hpc          1    debug*      idle    8    8:1:1      1        0      1   (null)   none
mammoth      1   highmem      idle   16   16:1:1      1        0      1   (null)   none
taurus       1     batch      idle   64   64:1:1      1        0      1   (null)   none

Using Modules

[aorth@hpc: ~]$ R    
-bash: R: command not found

[aorth@hpc: ~]$ module avail R
--------------------------- /export/apps/modules/modulefiles ---------------------------
R/2.11.0        R/2.12.2        R/2.13.0        R/2.15.2        R/3.0.0         R/latest
[aorth@hpc: ~]$ module load R/3.0.0
[aorth@hpc: ~]$ R

R version 3.0.0 (2013-04-03) -- "Masked Marvel"
Copyright (C) 2013 The R Foundation for Statistical Computing
Platform: x86_64-unknown-linux-gnu (64-bit)

module avail

For The Adventurous