federica bianco PRO
astro | data science | data for good
good-plot vs bad-plot
federica bianco
@fedhere
a few historical plots and why they made history
H-R diagram:
the life of a star
https://en.wikipedia.org/wiki/Hertzsprung%E2%80%93Russell_diagram
we visualize to
communicate (Tufte)
and to
explore
(Thorp)
increased data volume
Big data:
One of Thorp’s projects is a visualization of the number of times the terms “communism” (bottom) and “terrorism” (top) appeared in The New York Times, from 1981 until 2009. The spike for “terrorism” is the reflection of 9/11. As the word “terrorism” is used more and more, the use of the word “communism” decreases. (Image courtesy Jer Thorp; flickr.com/photos/blprnt/)
Ambiguity | distortion | distraction.
An example of ambiguity in visualizations that is common in peer review physics
different stretch
Ambiguity | distortion | distraction.
how would you improve these plots?
how would you improve these plots?
I would say this plot is at the limit of confusion (information saturation)
Ambiguity | distortion | distraction.
((=misleading)
obstruction
clutter
deformation
No Unjustified 3D
from private communication...
No Unjustified 3D
how would you improve these plots?
how would you improve these plots?
Mollweide projection
equirectangular projection
necessary distortions
An example of ambiguity in visualizations that is common in peer reviewed physics
duplication of data: commonly planet transit and eclipsing binary dataset are repeated twice (consecutively along the x axis)
A highly unequal-mass eclipsing M-dwarf binary in the WFCAM Transit Survey
Nefs, S.V. et al. MNRAS. 431 (2013) 3240 arXiv:1303.0945 [astro-ph.SR]
sometimes we use distortion
sometimes we use distortion
how would you improve these plots?
Sometime the distraction is a consequence of the complexity of the data.
what makes a good visualization?
Tufte's rules
Edward Tufte
Tufte’s rules:
Lie factor =
size of the effect in the graphic
size of the effect in the data
Tufte’s rules:
Lie factor =
size of the effect in the graphic
size of the effect in the data
Astronomical Surveys Data Rates
SKA
(2025)
(original graphics: Leanne Guy)
Necessary lie factor:
log scale plots!
(think about your audience, will they understand it?)
Tufte’s rules:
- The representation of numbers, as physically measured on the surface of the graph itself, should be directly proportional to the numerical quantities represented ("lie factor")
- Clear, detailed and thorough labeling should be used to defeat graphical distortion and ambiguity. Write out explanations of the data on the graph itself. Label important events in the data
- Show data variation, not design variation
- In time-series displays of money, deflated and standardized units of monetary measurement are nearly always better than nominal units.
- The number of information carrying (variable) dimensions depicted should not exceed the number of dimensions in the data. Graphics must not quote data out of context.
effect size ~ 1
data/ink -> large
no chart junk
use small-multiples
avoid redundancy in communication
Data to Ink Ratio
Tufte’s rules:
- The representation of numbers, as physically measured on the surface of the graph itself, should be directly proportional to the numerical quantities represented ("lie factor")
- Clear, detailed and thorough labeling should be used to defeat graphical distortion and ambiguity. Write out explanations of the data on the graph itself. Label important events in the data
- Show data variation, not design variation
- In time-series displays of money, deflated and standardized units of monetary measurement are nearly always better than nominal units.
- The number of information carrying (variable) dimensions depicted should not exceed the number of dimensions in the data. Graphics must not quote data out of context.
effect size ~ 1
data/ink -> large
no chart junk
use small-multiples
avoid redundancy in communication
Tufte’s rules:
Chart Junk
the excessive and unnecessary
use of graphical effects
Tufte’s rules:
- The representation of numbers, as physically measured on the surface of the graph itself, should be directly proportional to the numerical quantities represented ("lie factor")
- Clear, detailed and thorough labeling should be used to defeat graphical distortion and ambiguity. Write out explanations of the data on the graph itself. Label important events in the data
- Show data variation, not design variation
- In time-series displays of money, deflated and standardized units of monetary measurement are nearly always better than nominal units.
- The number of information carrying (variable) dimensions depicted should not exceed the number of dimensions in the data. Graphics must not quote data out of context.
effect size ~ 1
data/ink -> large
no chart junk
use small-multiples
avoid redundancy in communication
Tufte’s rules:
- The representation of numbers, as physically measured on the surface of the graph itself, should be directly proportional to the numerical quantities represented ("lie factor")
- Clear, detailed and thorough labeling should be used to defeat graphical distortion and ambiguity. Write out explanations of the data on the graph itself. Label important events in the data
- Show data variation, not design variation
- (In time-series displays of money), deflated and standardized units of monetary measurement are nearly always better than nominal units.
- The number of information carrying (variable) dimensions depicted should not exceed the number of dimensions in the data. Graphics must not quote data out of context.
effect size ~ 1
data/ink -> large
no chart junk
use small-multiples
avoid redundancy in communication
Tufte’s rules:
Small multiples
encourage comparison
sparkline graph
Tufte’s rules:
Small multiples
encourage comparison
sparkline graph
Tufte’s rules:
Small multiples
work really well with maps!
https://mahb.stanford.edu/whats-happening/167-tiny-maps-tell-major-story-climate-change/
Galileo Galilei, Jupiter moons, 1610
Tufte’s rules:
Galileo Galilei, Jupiter moons, 1610
Tufte’s rules:
every feature should be associated with only 1 graphical element
(here color is redundant with length)
Tufte’s rules:
- The representation of numbers, as physically measured on the surface of the graph itself, should be directly proportional to the numerical quantities represented ("lie factor")
- Clear, detailed and thorough labeling should be used to defeat graphical distortion and ambiguity. Write out explanations of the data on the graph itself. Label important events in the data
- Show data variation, not design variation
- (In time-series displays of money), deflated and standardized units of monetary measurement are nearly always better than nominal units.
- The number of information carrying (variable) dimensions depicted should not exceed the number of dimensions in the data. Graphics must not quote data out of context.
effect size ~ 1
data/ink -> large
no chart junk
use small-multiples
avoid redundancy in communication
Tufte’s rules:
Tufte’s rules:
chart junk
2 graphical elements for frequency
(color and position)
low data/ink ratio
no comparison
Tufte’s rules:
chart junk
2 graphical elements for frequency
(color and position)
no comparison
Tufte’s rules:
chart junk
2 graphical elements for frequency
(color and position)
low data/ink ratio
no comparison
comparison but scale out of context
high effect-size due to the choice of color map (more on this later)
Graphic Vocabulary
- Continuous: distance to the closest star (can take any value)
Continuous data may be:
- Continuous Ordinal: Earthquakes (notlinear scale)
- Interval: F temperature - interval size preserved
- Ratio: Car speed - 0 is naturally defined
- Discrete: any countable, e.g. number of brain synapses
Discrete data may be:
- Counts: number of bacteria at time t in section A
- Ordinal: survey response Good/Fair/Poor
-
Categorical: fermion - bosons: any object by class
Data may also be:
- Censored: star mass >30 Msun
- Missing: “Prefer not to answer” (NA / NaN)
data types
graphical elements work differently on different data types
Stevens 1975
response to length:
when shown something 4x as long we perceive it as being 4x as long
response to brightness:
when shown something 4x as bright we perceive it as being 2x as bright
I=S
I=\sqrt{S}
response to saturation:
when shown something 4x as saturated we perceive it as being 11x as saturated
I=S^{1.7}
Heer and Bostock 2010
modern version gets uncertainties to these quantities by crowdsourcing the tests
Stevens 1975
Heer and Bostock 2010
Common Problems
too many time series
too many time series
Tufte's small multiples and
spakrlines
- In time-series displays of <money>, deflated and standardized units of monetary measurement are nearly always better than nominal units.
enable comparison by giving the data center stage
too many time series
Time series heatmaps
enable comparison by giving the data center stage
A common problem: too many points
plt.plot(Teff, logg, 'k.')A common problem: too many points
solution: subsample
plt.plot(Teff[::10], logg[::10], 'k.')plt.plot(Teff, logg, 'k.')A common problem: too many points
plt.plot(Teff, logg, 'k.')plt.plot(Teff, logg, 'k.', alpha=0.1)solution: alpha
solution: subsample
plt.plot(Teff[::10], logg[::10], 'k.')A common problem: too many points
plt.plot(Teff, logg, 'k.')solution: scatter contours
solution: subsample
plt.plot(Teff[::10], logg[::10], 'k.')astroml
A common problem: too many points
Bad Color Choice!
Color
theory
(and good practice)
Good and Bad color choices
very real consequences of bad color choices
Borkin et al. 2011
Borkin et al. 2011
Eye Physiology and color perception deficiencies
Rods | Cones
80M
Rods | Cones
80M
Brightness | Color
Rods | Cones
80M
Brightness | Color
80M | 5M
Rods | Cones
80M
Brightness | Color
80M | 5M
RODS
+
CONES
RODS
Rods | Cones
80M
Brightness | Color
R
G
B
color blindness
Color blindness (color vision deficiency, CVD) affects approximately
1 in 12 men (8%) and 1 in 200 women
in the world.
Worldwide, there are approximately 300 million people with colour blindness, almost the same number of people as the entire population of the USA!
color blindness
color blindness
Protanopia
color blindness
Protanopia (red-blind)
color blindness
Protanopia (green-blind)
color blindness
Tritanopia (blue-blind)
use the http://colororacle.org/ app to test your plots for color-blindness
Kelly 1965 designed a list of 22 maximally contrasting colors for colorblind compliance (the “Kelly colors”):
"#023fa5", "#7d87b9", "#bec1d4", "#d6bcc0", "#bb7784", "#8e063b", "#4a6fe3", "#8595e1", "#b5bbe3", "#e6afb9", "#e07b91", "#d33f6a", "#11c638", "#8dd593", "#c6dec7", "#ead3c6", "#f0b98d", "#ef9708", "#0fcfc0", "#9cded6", "#d5eae7", "#f3e1eb", "#f6c4e1", "#f79cd4"
“Du Bois was aware that while unmoving prose and dry presentations of charts and graphs might catch attention from specialists, this approach would not garner notice beyond narrow circles of academics,” Aldon Morris writes in the essay “American Negro at Paris, 1900.” “Such social science was useless to the liberation of oppressed peoples. Breaking from tradition, Du Bois was among the first great American public intellectuals whose reach extended beyond the academy to the masses.”
https://hyperallergic.com/476334/how-w-e-b-du-bois-meticulously-visualized-20th-century-black-america/
“The colorful charts, graphs, and maps presented at the 1900 Paris Exposition by famed sociologist and black rights activist W. E. B. Du Bois offered a view into the lives of black Americans, conveying a literal and figurative representation of 'the color line'."
After graduating with a Ph.D. in history from Harvard University, W.E.B. Du Bois, the prominent African-American intellectual, sought a way to process all this information showing why the African disapora in America was being held back in a tangible, contextualized form.
W.E.B. Du Bois 1868-1963, sociologist, black right activist, graphic designer ante litteram
a few historical plots and why they made history
W.E.B. Du Bois
February 23, 1868 – August 27, 1963
American sociologist, socialist, historian, civil rights activist, Pan-Africanist, author, writer and editor
https://inspirehep.net/record/1082448/plots
a few historical plots and why they made history
W.E.B. Du Bois
Smithsonian Magazine
Alternatives to visualization
The theory that the planets and stars in their (circular) motion (around the earth) would produce a sound (and that that sound would be pleasant and harmonious) originate in ancient Greece with Pythagora (that guy must have never slept cause so many things "originate" from him.... (I'm suspicious)), and later formalized with notes by Kepler (him too.... must have never slept!)
"Kepler did not believe this "music" to be audible, but felt that it could nevertheless be heard by the soul" https://en.wikipedia.org/wiki/Musica_universalis
musica universalis
(perhaps related philosophy parenthesis)
Research Inclusion: sonification of astrophysical time series from the Rubin LSST
Sid Patel, UD undergrad summer research project
Sonification: Data → Sound
New way of understanding data
- Can be complementary to visualizations
Gives access to people who cannot
interpret data visuallySounds cool! Good for public outreach
while eyesight is the most developed sense for humanity in general consider perceptual differences to assure accessibility and equality!
sonification, tactile data 3D printed, and accessible colors and visual properties
VIZ metals23
By federica bianco
VIZ metals23
some notes on visualizations
