modos --help

Usage: modo [OPTIONS] COMMAND [ARGS]...

Options:
  --help  Show this message and exit.

Commands:
  add      Add elements to a digital object.
  create   Create a digital object.
  publish  Creates a semantic artifact allowing to publish a digital...
  remove   Removes the target element from the digital object, along with...
  show     Show the contents of a digital object.

modo=MODO(path= 'modo-demo/ex', s3_endpoint = 'http://localhost/s3')
modo.metadata
{'ex': {'@type': 'MODO',
  'creation_date': '2024-02-19T00:00:00',
  'description': 'Dummy modo for tests.',
  'has_assay': ['assay1'],
  'id': 'ex',
  'last_update_date': '2024-02-19T00:00:00',
  'name': 'Example MODO',
  'source_uri': 'http://example.org/ex'},
 ..}

from modos.api import MODO
modo = MODO("data/ex")

modo.metadata

{'ex': {'@type': 'MODO',
        'creation_date': '2024-02-19T00:00:00',
        'description': 'Dummy modo for tests.',
        'has_assay': ['assay1'],
        'id': 'ex',
        'last_update_date': '2024-02-19T00:00:00',
        'name': 'Example MODO',
        'source_uri': 'http://example.org/ex'},
 '/data/demo1': {'@type': 'DataEntity',
                 'data_format': 'CRAM',
                 'data_path': 'demo1.cram',
                 'description': 'Dummy data for tests',
                 'has_sample': ['sample1'],
                 'name': 'Demo 1'},
 '/sample/sample1': {'@type': 'Sample',
                     'cell_type': 'astrocyte',
                     'description': 'Dummy sample for tests',
                     'name': 'Sample 1',
                     'sex': 'Male',
                     'source_material': 'brain tissue'},
 }