Global Universal Metabarcoding of Plankton for Improving Ocean Biogeochemical Models
2022-11-15, Eco'omics Group
Jesse McNichol, Jed Fuhrman
Microbe art: @claudia_traboni
p16S
e16S
18S
-
Comprehensive community data from single PCR assay:
- p(rokaryotic)16S
- e(ukaryotic)16S
- Eukaryotic 18S
(1) Universal Metabarcoding of Plankton
Microbe art: @claudia_traboni
18S
p16S
e16S
(1) Universal Metabarcoding of Plankton
-
Comprehensive community data from single PCR assay:
- p(rokaryotic)16S
- e(ukaryotic)16S
- Eukaryotic 18S
(2) Global Universal Metabarcoding of Plankton
Microheterotroph modelling
DARWIN model refinement
MOSAiC data?
A collection of harmonized data and open-source tools to investigate the hidden worlds of ocean microbes"
Craig Carlson, Elisa Halewood, UCSB
Fraction of 18S amplicon sequences
16S
plastid 16S
18S
Jan-Feb 2005
Feb-Mar 2006
With deep sequencing, good coverage for all 3 domains
Universal Metabarcoding example: P16N/S
plastid
16S
mito 16S
nuclear 18S
Space / time
Abundance
A eukaryotic phytoplankter
Other applications: network analysis
221115_MOSAiC_meeting
By jcmcnch
