Viktor Petukhov
PhD student at the University of Copenhagen
Segmentation problems
Molecules
DAPI
*Moffitt, J. R. et al. Molecular, spatial and functional single-cell profiling of the hypothalamic preoptic region. Science 362 (2018)
Segmentation problems
MERFISH
[1]
osm-FISH
[2]
1. Moffitt, J. R. et al. Molecular, spatial and functional single-cell profiling of the hypothalamic preoptic region. Science 362 (2018)
2. Simone Codeluppi, Lars E. Borm, Amit Zeisel, Gioele La Manno, Josina A. van Lunteren, Camilla I. Svensson & Sten Linnarsson. Nature Methods 15, 932–935 (2018)
Neighborhood composition
Segmentation across protocols
Segmentation across protocols
MERFISH gut data
Segment nuclei against cytoplasm
NCV
Compartments
Segment nuclei against cytoplasm
Baysor package
Bordaeux, spatial segmentation
By Viktor Petukhov
Bordaeux, spatial segmentation
PKLab progress meeting presentation
